Boxshade
Boxshade
http://www.ch.embnet.org/software/BOX_form.html
Pretty-printing of multiple sequence alignments
Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.
Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML
Download
https://downloads.sourceforge.net/project/boxshade/boxshade/3.2.3/boxshade-3.2.3.tar.gz
Categories
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian
Verified on
20 March 2013
Notes
License: public-domain-claim
public-domain-claim Boxshade is completely public-domain and may be passed around and modified without any notice to the author.
the authors addresses are:
Kay Hofmann Michael D. Baron Bioinformatics Group BBSRC Institute for Animal Health ISREC Pirbright, Surrey GU24 0NF CH-1066 Epalinges s/Lausanne U.K. Switzerland
C port by
Hartmut Schirmer Technische Fakultaet Kaiserstr. 2 D-24143 Kiel Germany
for any comments write an E-mail to Kay: khofmann@isrec- sun1.unil.ch Michael: baron@bbsrc.ac.uk (though kay wrote 99% of the program and is more likely to be of help, especially with input and output problems) Hartmut: hsc@techfak .uni-kiel.de (don't send Kay or Michael any questions concerning the 'C' version of boxshade)
(The comments after the email addresses are form the authors
themselves.)
Leaders and contributors
Resources and communication
Audience | Resource type | URI |
---|---|---|
Download | ftp://www.isrec.isb-sib.ch/pub/software/unix/boxshade/3.3.1/ | |
Debian (Ref) | https://tracker.debian.org/pkg/boxshade |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
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