Boxshade

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Boxshade

http://www.ch.embnet.org/software/BOX_form.html
Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Download

https://downloads.sourceforge.net/project/boxshade/boxshade/3.2.3/boxshade-3.2.3.tar.gz

Categories

• Runs-on:GNU/Linux

Licensing

License

Verified by

Verified on

Notes

License

Other

Verified by

Debian

Verified on

20 March 2013

Notes

License: public-domain-claim

public-domain-claim Boxshade is completely public-domain and may be passed around and modified without any notice to the author.

the authors addresses are:

Kay Hofmann Michael D. Baron Bioinformatics Group BBSRC Institute for Animal Health ISREC Pirbright, Surrey GU24 0NF CH-1066 Epalinges s/Lausanne U.K. Switzerland

C port by

Hartmut Schirmer Technische Fakultaet Kaiserstr. 2 D-24143 Kiel Germany

for any comments write an E-mail to Kay: khofmann@isrec- sun1.unil.ch Michael: baron@bbsrc.ac.uk (though kay wrote 99% of the program and is more likely to be of help, especially with input and output problems) Hartmut: hsc@techfak .uni-kiel.de (don't send Kay or Michael any questions concerning the 'C' version of boxshade)

(The comments after the email addresses are form the authors

themselves.)

Leaders and contributors

Resources and communication

Audience	Resource type	URI
	Download	ftp://www.isrec.isb-sib.ch/pub/software/unix/boxshade/3.3.1/
Debian (Ref)		https://tracker.debian.org/pkg/boxshade

Software prerequisites

Entry

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Date	2013-03-20
Source	Debian import
Source link	http://packages.debian.org/sid/boxshade

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