Difference between revisions of "Bwa"
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{{Entry | {{Entry | ||
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|Name=Bwa | |Name=Bwa | ||
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|Short description=Burrows-Wheeler Aligner | |Short description=Burrows-Wheeler Aligner | ||
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|Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively | |Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively | ||
short nucleotide sequences against a long reference sequence such | short nucleotide sequences against a long reference sequence such | ||
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algorithms do gapped alignment. They are usually more accurate | algorithms do gapped alignment. They are usually more accurate | ||
and faster on queries with low error rates. | and faster on queries with low error rates. | ||
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|Homepage URL=http://bio-bwa.sourceforge.net/ | |Homepage URL=http://bio-bwa.sourceforge.net/ | ||
| + | |Computer languages=C | ||
| + | |Accepts cryptocurrency donations=No | ||
| + | |Last review by=Bendikker | ||
| + | |Last review date=2018/02/07 | ||
| + | |Submitted date=2013-03-20 | ||
|Is GNU=No | |Is GNU=No | ||
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}} | }} | ||
{{Project license | {{Project license | ||
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|License copyright=© © 2008 Genome Research Ltd (GRL) | |License copyright=© © 2008 Genome Research Ltd (GRL) | ||
© 2008, by Heng Li <lh3@sanger.ac.uk> | © 2008, by Heng Li <lh3@sanger.ac.uk> | ||
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© © 2008 Yuta Mori | © © 2008 Yuta Mori | ||
© © 2011 by Attractive Chaos <attractor@live.co.uk> | © © 2011 by Attractive Chaos <attractor@live.co.uk> | ||
| − | + | |License verified by=Debian | |
| − | |License= | + | |License verified date=2013-03-20 |
|License note=License: MIT | |License note=License: MIT | ||
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{{Project license | {{Project license | ||
| + | |License=GPLv2orlater | ||
| + | |License copyright=© © 2004, Wong Chi Kwong | ||
| + | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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|License note=License: GPL-2+ | |License note=License: GPL-2+ | ||
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}} | }} | ||
{{Project license | {{Project license | ||
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| + | |License copyright=© 1999, N. Jesper Larsson | ||
| + | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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|License note=License: other | |License note=License: other | ||
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}} | }} | ||
{{Resource | {{Resource | ||
| + | |Resource audience=Debian | ||
| + | |Resource URL=http://tracker.debian.org/pkg/bwa | ||
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| + | {{Resource | ||
| + | |Resource kind=Download | ||
|Resource URL=http://sourceforge.net/projects/bio-bwa/files/bwa-0.6.1.tar.bz2 | |Resource URL=http://sourceforge.net/projects/bio-bwa/files/bwa-0.6.1.tar.bz2 | ||
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| + | {{Software category}} | ||
| + | {{Featured}} | ||
| + | {{Import | ||
| + | |Date=2013-03-20 | ||
| + | |Source=Debian import | ||
| + | |Source link=http://packages.debian.org/sid/bwa | ||
}} | }} | ||
Revision as of 12:54, 7 February 2018
BWA
http://bio-bwa.sourceforge.net/
Burrows-Wheeler Aligner.
Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and BWA-SW. The former works for query sequences shorter than 200 bp and the latter for longer sequences up to around 100 kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Mailing List | https://sourceforge.net/projects/bio-bwa/lists/bio-bwa-help | |
| General | https://sourceforge.net/projects/bio-bwa/ | |
| VCS Repository Webview | https://github.com/lh3/bwa | |
| Debian (Ref) | https://tracker.debian.org/pkg/bwa |
Software prerequisites
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The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.