Difference between revisions of "Bwa"
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{{Entry | {{Entry | ||
| − | + | |Name=BWA | |
| − | + | |Short description=Burrows-Wheeler Aligner. | |
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| − | |Name= | ||
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| − | |Short description=Burrows-Wheeler Aligner | ||
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|Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively | |Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively | ||
short nucleotide sequences against a long reference sequence such | short nucleotide sequences against a long reference sequence such | ||
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algorithms do gapped alignment. They are usually more accurate | algorithms do gapped alignment. They are usually more accurate | ||
and faster on queries with low error rates. | and faster on queries with low error rates. | ||
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|Homepage URL=http://bio-bwa.sourceforge.net/ | |Homepage URL=http://bio-bwa.sourceforge.net/ | ||
| + | |Is High Priority Project=No | ||
| + | |VCS checkout command=https://github.com/lh3/bwa.git | ||
| + | |Documentation note=http://bio-bwa.sourceforge.net/bwa.shtml | ||
| + | |Decommissioned or Obsolete=No | ||
| + | |Version identifier=0.7.17 | ||
| + | |Version date=2017/10/23 | ||
| + | |Version status=stable | ||
| + | |Version download=https://github.com/lh3/bwa/archive/v0.7.17.tar.gz | ||
| + | |Last review by=Bendikker | ||
| + | |Last review date=2020/03/30 | ||
| + | |Submitted date=2013-03-20 | ||
| + | |Accepts cryptocurrency donations=No | ||
| + | |Test entry=No | ||
|Is GNU=No | |Is GNU=No | ||
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}} | }} | ||
{{Project license | {{Project license | ||
| − | |License | + | |License=Expat |
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|License copyright=© © 2008 Genome Research Ltd (GRL) | |License copyright=© © 2008 Genome Research Ltd (GRL) | ||
© 2008, by Heng Li <lh3@sanger.ac.uk> | © 2008, by Heng Li <lh3@sanger.ac.uk> | ||
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© © 2008 Yuta Mori | © © 2008 Yuta Mori | ||
© © 2011 by Attractive Chaos <attractor@live.co.uk> | © © 2011 by Attractive Chaos <attractor@live.co.uk> | ||
| − | + | |License verified by=Debian | |
| − | |License= | + | |License verified date=2013-03-20 |
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}} | }} | ||
{{Project license | {{Project license | ||
| + | |License=GPLv2orlater | ||
| + | |License copyright=© © 2004, Wong Chi Kwong | ||
| + | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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}} | }} | ||
{{Project license | {{Project license | ||
| − | |License | + | |License=Other |
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|License copyright=© 1999, N. Jesper Larsson | |License copyright=© 1999, N. Jesper Larsson | ||
| − | + | This software may be used freely for any purpose. However, | |
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when distributed, the original source must be clearly stated, | when distributed, the original source must be clearly stated, | ||
and, when the source code is distributed, the copyright notice | and, when the source code is distributed, the copyright notice | ||
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marked. No warranty is given regarding the quality of this | marked. No warranty is given regarding the quality of this | ||
software. | software. | ||
| + | |License verified by=Debian | ||
| + | |License verified date=2013-03-20 | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource audience=Debian (Ref) | ||
| + | |Resource URL=https://tracker.debian.org/pkg/bwa | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource kind=VCS Repository Webview | ||
| + | |Resource URL=https://github.com/lh3/bwa | ||
}} | }} | ||
{{Resource | {{Resource | ||
| − | |Resource URL= | + | |Resource kind=Mailing List |
| − | |Resource kind= | + | |Resource URL=https://sourceforge.net/projects/bio-bwa/lists/bio-bwa-help |
| + | }} | ||
| + | {{Resource | ||
| + | |Resource kind=General | ||
| + | |Resource URL=https://sourceforge.net/projects/bio-bwa/ | ||
| + | }} | ||
| + | {{Software category | ||
| + | |Programming-language=C | ||
| + | |Runs-on=GNU/Linux | ||
| + | }} | ||
| + | {{Featured}} | ||
| + | {{Import | ||
| + | |Date=2013-03-20 | ||
| + | |Source=Debian import | ||
| + | |Source link=http://packages.debian.org/sid/bwa | ||
}} | }} | ||
Latest revision as of 13:40, 31 March 2020
[edit]
BWA
http://bio-bwa.sourceforge.net/
Burrows-Wheeler Aligner.
Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and BWA-SW. The former works for query sequences shorter than 200 bp and the latter for longer sequences up to around 100 kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Mailing List | https://sourceforge.net/projects/bio-bwa/lists/bio-bwa-help | |
| General | https://sourceforge.net/projects/bio-bwa/ | |
| VCS Repository Webview | https://github.com/lh3/bwa | |
| Debian (Ref) | https://tracker.debian.org/pkg/bwa |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.