Difference between revisions of "Bwa"

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{{Entry
 
{{Entry
|Name=Bwa
+
|Name=BWA
|Short description=Burrows-Wheeler Aligner
+
|Short description=Burrows-Wheeler Aligner.
 
|Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively
 
|Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively
 
short nucleotide sequences against a long reference sequence such
 
short nucleotide sequences against a long reference sequence such
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and faster on queries with low error rates.
 
and faster on queries with low error rates.
 
|Homepage URL=http://bio-bwa.sourceforge.net/
 
|Homepage URL=http://bio-bwa.sourceforge.net/
|Computer languages=C
+
|Is High Priority Project=No
|Accepts cryptocurrency donations=No
+
|VCS checkout command=https://github.com/lh3/bwa.git
 +
|Documentation note=http://bio-bwa.sourceforge.net/bwa.shtml
 +
|Decommissioned or Obsolete=No
 +
|Version identifier=0.7.17
 +
|Version date=2017/10/23
 +
|Version status=stable
 +
|Version download=https://github.com/lh3/bwa/archive/v0.7.17.tar.gz
 
|Last review by=Bendikker
 
|Last review by=Bendikker
|Last review date=2018/02/07
+
|Last review date=2020/03/30
 
|Submitted date=2013-03-20
 
|Submitted date=2013-03-20
 +
|Accepts cryptocurrency donations=No
 +
|Test entry=No
 
|Is GNU=No
 
|Is GNU=No
 
}}
 
}}
 
{{Project license
 
{{Project license
|License=Other
+
|License=Expat
 
|License copyright=© © 2008 Genome Research Ltd (GRL)
 
|License copyright=© © 2008 Genome Research Ltd (GRL)
 
© 2008, by Heng Li <lh3@sanger.ac.uk>
 
© 2008, by Heng Li <lh3@sanger.ac.uk>
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|License verified by=Debian
 
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License note=License: MIT
 
 
MIT Permission is hereby granted, free of charge, to any person
 
obtaining a copy of this software and associated documentation
 
files (the "Software"), to deal in the Software without
 
restriction, including without limitation the rights to use,
 
copy, modify, merge, publish, distribute, sublicense, and/or sell
 
copies of the Software, and to permit persons to whom the
 
Software is furnished to do so, subject to the following
 
conditions: .  The above copyright notice and this permission
 
notice shall be included in all copies or substantial portions of
 
the Software.
 
 
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
 
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
 
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
 
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
 
HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
 
WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
 
OTHER DEALINGS IN THE SOFTWARE.
 
 
}}
 
}}
 
{{Project license
 
{{Project license
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|License verified by=Debian
 
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License note=License: GPL-2+
 
 
GPL-2+ This program is free software; you can redistribute it
 
and/or modify it under the terms of the GNU General Public
 
License as published by the Free Software Foundation; either
 
version 2 of the License, or (at your option) any later version.
 
 
This program is distributed in the hope that it will be useful,
 
but WITHOUT ANY WARRANTY; without even the implied warranty of
 
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 
General Public License for more details.
 
 
You should have received a copy of the GNU General Public License
 
along with this program; if not, write to the Free Software
 
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
 
02110-1301 USA.
 
 
}}
 
}}
 
{{Project license
 
{{Project license
 
|License=Other
 
|License=Other
 
|License copyright=© 1999, N. Jesper Larsson
 
|License copyright=© 1999, N. Jesper Larsson
|License verified by=Debian
+
This software may be used freely for any purpose. However,
|License verified date=2013-03-20
 
|License note=License: other
 
 
 
other This software may be used freely for any purpose. However,
 
 
when distributed, the original source must be clearly stated,
 
when distributed, the original source must be clearly stated,
 
and, when the source code is distributed, the copyright notice
 
and, when the source code is distributed, the copyright notice
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marked. No warranty is given regarding the quality of this
 
marked. No warranty is given regarding the quality of this
 
software.
 
software.
 +
|License verified by=Debian
 +
|License verified date=2013-03-20
 
}}
 
}}
 
{{Resource
 
{{Resource
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}}
 
}}
 
{{Resource
 
{{Resource
|Resource kind=Download
+
|Resource kind=VCS Repository Webview
|Resource URL=http://sourceforge.net/projects/bio-bwa/files/bwa-0.6.1.tar.bz2
+
|Resource URL=https://github.com/lh3/bwa
 +
}}
 +
{{Resource
 +
|Resource kind=Mailing List
 +
|Resource URL=https://sourceforge.net/projects/bio-bwa/lists/bio-bwa-help
 +
}}
 +
{{Resource
 +
|Resource kind=General
 +
|Resource URL=https://sourceforge.net/projects/bio-bwa/
 +
}}
 +
{{Software category
 +
|Programming-language=C
 +
|Runs-on=GNU/Linux
 
}}
 
}}
{{Software category}}
 
 
{{Featured}}
 
{{Featured}}
 
{{Import
 
{{Import

Latest revision as of 13:40, 31 March 2020


[edit]

BWA

http://bio-bwa.sourceforge.net/
Burrows-Wheeler Aligner.

Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and BWA-SW. The former works for query sequences shorter than 200 bp and the latter for longer sequences up to around 100 kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates.





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian

Verified on

20 March 2013

License

Other

Verified by

Debian

Verified on

20 March 2013

License

Expat

Verified by

Debian

Verified on

20 March 2013




Leaders and contributors

Resources and communication

AudienceResource typeURI
Mailing Listhttps://sourceforge.net/projects/bio-bwa/lists/bio-bwa-help
Generalhttps://sourceforge.net/projects/bio-bwa/
VCS Repository Webviewhttps://github.com/lh3/bwa
Debian (Ref)https://tracker.debian.org/pkg/bwa


Software prerequisites




Entry













"Debian (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.











Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/bwa

[[Category:]]



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The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.