Difference between revisions of "Bwa"

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(Debian import)
 
(Added Debian link)
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{{Entry
 
{{Entry
|Status=
 
|User level=
 
|Submitted by=Debian import
 
|Computer languages=C
 
 
|Name=Bwa
 
|Name=Bwa
|Submitted date=2013-03-20
 
 
|Short description=Burrows-Wheeler Aligner
 
|Short description=Burrows-Wheeler Aligner
|VCS checkout command=
 
 
|Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively
 
|Full description=Burrows-Wheeler Aligner (BWA) is a program that aligns relatively
 
short nucleotide sequences against a long reference sequence such
 
short nucleotide sequences against a long reference sequence such
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algorithms do gapped alignment. They are usually more accurate
 
algorithms do gapped alignment. They are usually more accurate
 
and faster on queries with low error rates.
 
and faster on queries with low error rates.
|Component programs=
 
 
|Homepage URL=http://bio-bwa.sourceforge.net/
 
|Homepage URL=http://bio-bwa.sourceforge.net/
 +
|Computer languages=C
 +
|Accepts cryptocurrency donations=No
 +
|Last review by=Bendikker
 +
|Last review date=2018/02/07
 +
|Submitted date=2013-03-20
 
|Is GNU=No
 
|Is GNU=No
}}
 
{{Import
 
|Date=2013-03-20
 
|Source=Debian import
 
|Source link=http://packages.debian.org/sid/bwa
 
 
}}
 
}}
 
{{Project license
 
{{Project license
|License verified date=2013-03-20
+
|License=Other
|License verified by=Debian
 
 
|License copyright=© © 2008 Genome Research Ltd (GRL)
 
|License copyright=© © 2008 Genome Research Ltd (GRL)
 
© 2008, by Heng Li <lh3@sanger.ac.uk>
 
© 2008, by Heng Li <lh3@sanger.ac.uk>
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© © 2008 Yuta Mori
 
© © 2008 Yuta Mori
 
© © 2011 by Attractive Chaos <attractor@live.co.uk>
 
© © 2011 by Attractive Chaos <attractor@live.co.uk>
 
+
|License verified by=Debian
|License=Other
+
|License verified date=2013-03-20
 
|License note=License: MIT
 
|License note=License: MIT
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=GPLv2orlater
 +
|License copyright=© © 2004, Wong Chi Kwong
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License verified by=Debian
 
|License copyright=© © 2004, Wong Chi Kwong
 
 
|License=GPLv2orlater
 
 
|License note=License: GPL-2+
 
|License note=License: GPL-2+
  
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}}
 
}}
 
{{Project license
 
{{Project license
 +
|License=Other
 +
|License copyright=© 1999, N. Jesper Larsson
 +
|License verified by=Debian
 
|License verified date=2013-03-20
 
|License verified date=2013-03-20
|License verified by=Debian
 
|License copyright=© 1999, N. Jesper Larsson
 
 
|License=Other
 
 
|License note=License: other
 
|License note=License: other
  
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}}
 
}}
 
{{Resource
 
{{Resource
 +
|Resource audience=Debian
 +
|Resource URL=http://tracker.debian.org/pkg/bwa
 +
}}
 +
{{Resource
 +
|Resource kind=Download
 
|Resource URL=http://sourceforge.net/projects/bio-bwa/files/bwa-0.6.1.tar.bz2
 
|Resource URL=http://sourceforge.net/projects/bio-bwa/files/bwa-0.6.1.tar.bz2
|Resource kind=Download
+
}}
 +
{{Software category}}
 +
{{Featured}}
 +
{{Import
 +
|Date=2013-03-20
 +
|Source=Debian import
 +
|Source link=http://packages.debian.org/sid/bwa
 
}}
 
}}

Revision as of 11:54, 7 February 2018


[edit]

BWA

http://bio-bwa.sourceforge.net/
Burrows-Wheeler Aligner.

Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and BWA-SW. The former works for query sequences shorter than 200 bp and the latter for longer sequences up to around 100 kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates.





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian

Verified on

20 March 2013

License

Other

Verified by

Debian

Verified on

20 March 2013

License

Expat

Verified by

Debian

Verified on

20 March 2013




Leaders and contributors

Resources and communication

AudienceResource typeURI
Mailing Listhttps://sourceforge.net/projects/bio-bwa/lists/bio-bwa-help
Generalhttps://sourceforge.net/projects/bio-bwa/
VCS Repository Webviewhttps://github.com/lh3/bwa
Debian (Ref)https://tracker.debian.org/pkg/bwa


Software prerequisites




Entry













"Debian" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/bwa

[[Category:]]



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