Difference between revisions of "Discosnp"
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Revision as of 14:33, 31 March 2020
DiscoSnp++
https://gatb.inria.fr/software/discosnp/
Discovering Single Nucleotide Polymorphism from raw set(s) of reads.
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP: 1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
Contact(s) | Role |
---|---|
Pierre Peterlongo | Maintainer |
Resources and communication
Audience | Resource type | URI |
---|---|---|
VCS Repository Webview | https://github.com/GATB/DiscoSnp | |
Debian (Ref) | https://tracker.debian.org/pkg/discosnp | |
General | https://colibread.inria.fr/software/discosnp/ | |
Mailing List | https://www.biostars.org/t/discosnp/ |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.