Discosnp

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DiscoSnp++

https://gatb.inria.fr/software/discosnp/
Discovering Single Nucleotide Polymorphism from raw set(s) of reads.

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP: 1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.

Documentation

https://colibread.inria.fr/files/2013/11/colloque_GE_2013_discoSnp.pdf

https://colibread.inria.fr/files/2013/10/demo_discoSnp.pdf

https://github.com/GATB/DiscoSnp/tree/master/doc





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

11 October 2014

License

Other

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

11 October 2014




Leaders and contributors

Contact(s)Role
Pierre Peterlongo Maintainer


Resources and communication

AudienceResource typeURI
Debian (Ref)https://tracker.debian.org/pkg/discosnp
VCS Repository Webviewhttps://github.com/GATB/DiscoSnp
Mailing Listhttps://www.biostars.org/t/discosnp/
Generalhttps://colibread.inria.fr/software/discosnp/


Software prerequisites

This entry (in part or in whole) was last reviewed on 30 March 2020.



Entry






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Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/discosnp

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