Difference between revisions of "E-CELL Simulation Environment"
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|Short description=Software for cellular and biochemical modeling and simulation | |Short description=Software for cellular and biochemical modeling and simulation | ||
|Full description=E-Cell System is an object-oriented software suite for modelling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components, driven by multiple algorithms with different timescales, to coexist. The core library is written in C++ with a Python binding, and frontend software uses Python. | |Full description=E-Cell System is an object-oriented software suite for modelling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components, driven by multiple algorithms with different timescales, to coexist. The core library is written in C++ with a Python binding, and frontend software uses Python. | ||
| + | |Homepage URL=https://github.com/ecell/ecell4/ | ||
|User level=none | |User level=none | ||
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|VCS checkout command=:pserver:anonymous@cvs.sourceforge.net:/cvsroot/ecell | |VCS checkout command=:pserver:anonymous@cvs.sourceforge.net:/cvsroot/ecell | ||
|Computer languages=C++,Shell script,Python | |Computer languages=C++,Shell script,Python | ||
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|Related projects=Bioinformatics_Template_Library,GAMGI,GAUL,GROMACS,Ghemical,gdpc | |Related projects=Bioinformatics_Template_Library,GAMGI,GAUL,GROMACS,Ghemical,gdpc | ||
|Keywords=biology,simulation,modelling,genetics,gene,DNA,E-CELL,cell,replication | |Keywords=biology,simulation,modelling,genetics,gene,DNA,E-CELL,cell,replication | ||
| − | | | + | |Version identifier=4.0.8 |
| − | |Last review by= | + | |Version date=2017/01/04 |
| − | |Last review date= | + | |Version status=stable |
| + | |Version download=https://github.com/ecell/ecell4/archive/v4.0.8.tar.gz | ||
| + | |Last review by=Alejandroindependiente | ||
| + | |Last review date=2017/03/13 | ||
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
|Submitted date=2011-04-01 | |Submitted date=2011-04-01 | ||
| − | | | + | |Status= |
| − | | | + | |Is GNU=No |
| − | | | + | |License verified date=2002-12-12 |
| − | | | + | }} |
| + | {{Project license | ||
| + | |License=GPLv2orlater with exception | ||
| + | |License verified by=Janet Casey | ||
|License verified date=2002-12-12 | |License verified date=2002-12-12 | ||
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}} | }} | ||
{{Person | {{Person | ||
| + | |Real name=Kouichi Takahashi | ||
|Role=Maintainer | |Role=Maintainer | ||
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|Email=shafi@e-cell.org | |Email=shafi@e-cell.org | ||
|Resource URL= | |Resource URL= | ||
}} | }} | ||
{{Person | {{Person | ||
| + | |Real name=See the AUTHORS file in the distribution for a complete list | ||
|Role=Contributor | |Role=Contributor | ||
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|Resource URL= | |Resource URL= | ||
}} | }} | ||
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{{Software category | {{Software category | ||
|Biology=genetics | |Biology=genetics | ||
| − | |Interface=command-line,x-window-system | + | |Interface=command-line, web, x-window-system |
| − | |Science=biology,chemistry | + | |Science=biology, chemistry |
|Use=science | |Use=science | ||
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}} | }} | ||
{{Software prerequisite | {{Software prerequisite | ||
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|Prerequisite description=boost C++ library | |Prerequisite description=boost C++ library | ||
}} | }} | ||
| + | {{Featured}} | ||
Latest revision as of 15:26, 13 March 2017
E-CELL Simulation Environment
https://github.com/ecell/ecell4/
Software for cellular and biochemical modeling and simulation
E-Cell System is an object-oriented software suite for modelling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components, driven by multiple algorithms with different timescales, to coexist. The core library is written in C++ with a Python binding, and frontend software uses Python.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Kouichi Takahashi | Maintainer |
| See the AUTHORS file in the distribution for a complete list | Contributor |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Developer | VCS Repository Webview | http://sourceforge.net/cvs/?group_id=72485 |
| Developer | Mailing List Info/Archive | http://lists.sourceforge.net/mailman/listinfo/ecell-devel |
| Bug Tracking | VCS Repository Webview | http://sourceforge.net/tracker/?group_id=72485 |
Software prerequisites
| Kind | Description |
|---|---|
| Weak prerequisite | gtk |
| Required to use | gsl |
| Source requirement | boost C++ library |
| Weak prerequisite | gnome |
| Required to use | Numeric Python |
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.