Difference between revisions of "FastQC"
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{{Entry | {{Entry | ||
| − | |Name= | + | |Name=FastQC |
| − | |Short description= | + | |Short description=Spot potential problems in high througput sequencing datasets. |
|Full description=FastQC aims to provide a simple way to do some quality control | |Full description=FastQC aims to provide a simple way to do some quality control | ||
checks on raw sequence data coming from high throughput | checks on raw sequence data coming from high throughput | ||
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allow automated generation of reports without running the | allow automated generation of reports without running the | ||
interactive application | interactive application | ||
| − | |Homepage URL= | + | |Homepage URL=https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ |
| − | | | + | |Is High Priority Project=No |
| + | |VCS checkout command=https://github.com/s-andrews/FastQC.git | ||
| + | |Documentation note=https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/ | ||
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| + | '''[https://www.gezapig.nl/covid.html COronaVIrus Disease 2019 (COVID-19) Special]''' | ||
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| + | If you have corrections to this entry or questions about it, please contact: mailto:directory-discuss@gnu.org | ||
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| + | |Decommissioned or Obsolete=No | ||
| + | |Version identifier=0.11.9 | ||
| + | |Version date=2020/01/08 | ||
| + | |Version status=stable | ||
| + | |Version download=https://github.com/s-andrews/FastQC/archive/v0.11.9.tar.gz | ||
|Last review by=Bendikker | |Last review by=Bendikker | ||
| − | |Last review date= | + | |Last review date=2020/03/30 |
|Submitted date=2013-03-20 | |Submitted date=2013-03-20 | ||
| + | |Paid support=https://www.fsf.org/resources/service/ | ||
| + | |Accepts cryptocurrency donations=No | ||
| + | |Test entry=No | ||
|Is GNU=No | |Is GNU=No | ||
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|License verified by=Debian | |License verified by=Debian | ||
|License verified date=2013-03-20 | |License verified date=2013-03-20 | ||
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|License verified by=Debian | |License verified by=Debian | ||
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{{Resource | {{Resource | ||
|Resource audience=Debian (Ref) (R) | |Resource audience=Debian (Ref) (R) | ||
|Resource URL=https://tracker.debian.org/pkg/fastqc | |Resource URL=https://tracker.debian.org/pkg/fastqc | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource kind=VCS Repository Webview | ||
| + | |Resource URL=https://github.com/s-andrews/FastQC | ||
}} | }} | ||
{{Resource | {{Resource | ||
|Resource kind=Download | |Resource kind=Download | ||
| − | |Resource URL= | + | |Resource URL=https://www.bioinformatics.babraham.ac.uk/projects/download.html |
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| + | {{Software category | ||
| + | |Biology=health-and-medicine | ||
| + | |Programming-language=java | ||
| + | |Runs-on=Windows, OS X, GNU/Linux | ||
}} | }} | ||
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{{Featured}} | {{Featured}} | ||
{{Import | {{Import | ||
Revision as of 09:19, 30 March 2020
FastQC
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Spot potential problems in high througput sequencing datasets.
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| VCS Repository Webview | https://github.com/s-andrews/FastQC | |
| Download | https://www.bioinformatics.babraham.ac.uk/projects/download.html | |
| Debian (Ref) (R) | https://tracker.debian.org/pkg/fastqc |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.