FastQC

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FastQC

https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Spot potential problems in high througput sequencing datasets.

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application

Documentation

https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/





Licensing

License

Verified by

Verified on

Notes

Verified by

Debian

Verified on

20 March 2013




Leaders and contributors

Resources and communication

AudienceResource typeURI
Debian (Ref) (R)https://tracker.debian.org/pkg/fastqc
VCS Repository Webviewhttps://github.com/s-andrews/FastQC
Downloadhttps://www.bioinformatics.babraham.ac.uk/projects/download.html


Software prerequisites

This entry (in part or in whole) was last reviewed on 30 March 2020.



Entry






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Date 2013-03-20
Source Debian import
Source link http://packages.debian.org/sid/fastqc

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