FastQC
FastQC
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Spot potential problems in high througput sequencing datasets.
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application
Licensing
License
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Leaders and contributors
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| VCS Repository Webview | https://github.com/s-andrews/FastQC | |
| Download | https://www.bioinformatics.babraham.ac.uk/projects/download.html | |
| Debian (Ref) (R) | https://tracker.debian.org/pkg/fastqc |
Software prerequisites
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