Difference between revisions of "GIIRA"
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| − | + | {{Entry | |
| + | |Name=Giira | ||
| + | |Short description=RNA-Seq driven gene finding incorporating ambiguous reads | ||
| + | |Full description=GIIRA is a gene prediction method that identifies potential | ||
| + | coding regions exclusively based on the mapping of reads from an | ||
| + | RNA-Seq experiment. It was foremost designed for prokaryotic | ||
| + | gene prediction and is able to resolve genes within the expressed | ||
| + | region of an operon. However, it is also applicable to eukaryotes | ||
| + | and predicts exon intron structures as well as alternative | ||
| + | isoforms. | ||
| + | |Homepage URL=http://sourceforge.net/projects/giira/ | ||
| + | |User level= | ||
| + | |Component programs= | ||
| + | |VCS checkout command= | ||
| + | |Computer languages= | ||
| + | |Status= | ||
| + | |Is GNU=No | ||
| + | |Version identifier=0.0.20140210-2 | ||
| + | |Version download=http://ftp.debian.org/debian/pool/main/g/giira/giira_0.0.20140210.orig.tar.xz | ||
| + | |Submitted by=Debian import | ||
| + | |Submitted date=2015-07-17 | ||
| + | }} | ||
| + | {{Import | ||
| + | |Source=Debian | ||
| + | |Source link=http://packages.debian.org/sid/giira | ||
| + | |Source packages=giira 0.0.20140210-2 | ||
| + | |Date=2015-07-17 | ||
| + | }} | ||
| + | {{Project license | ||
| + | |License=GPLv3 | ||
| + | |License copyright=Copyright 2013 Franziska Zickmann <ZickmannF@rki.de>Copyright Robert Koch-Institut | ||
| + | |License verified by=Debian: Andreas Tille <tille@debian.org> | ||
| + | |License verified date=2014-10-26 | ||
| + | |License note=License: gpl-3 | ||
| + | }} | ||
| + | {{Person | ||
| + | |Real name=Franziska Zickmann | ||
| + | |Role=contact | ||
| + | |Email=ZickmannF@rki.de | ||
| + | }} | ||
| + | {{Resource | ||
| + | |Resource kind=Download | ||
| + | |Resource URL=http://sourceforge.net/projects/giira/files/ | ||
| + | }} | ||
Revision as of 18:07, 14 February 2017
Giira
http://sourceforge.net/projects/giira/
RNA-Seq driven gene finding incorporating ambiguous reads
GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
26 October 2014
Notes
License: gpl-3
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Franziska Zickmann | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://sourceforge.net/projects/giira/files/ | |
| Debian (Ref) (R) | https://tracker.debian.org/pkg/giira |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.