Pathomx

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MetaPath

http://pathomx.org
Metabolic pathway visualisation and analysis

Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis.

The software functions as a hybrid of workflow and script-based approaches to analysis. Using workflows it is possible to construct rapid, reproducible analysis constructs for experimental data. By combining this with custom inline scripting it is possible to perform any analysis imaginable. Workflows can be dynamically re-arranged to test different approaches and saved to track the development of your approach. Saved workflows can also be shared with other users or groups, allowing instant reproduction of results and methods. Tools can export images as publication-ready high resolution images in common formats.





Licensing

License

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Notes

License

GNU GPL v3




Leaders and contributors

Contact(s)Role
Martin Fitzpatrick Lead developer


Resources and communication

AudienceResource typeURI
DeveloperVCS Repository Webviewhttps://github.com/pathomx/pathomx
Python (Ref)https://pypi.org/project/Pathomx
R (Ref) (R)https://cran.r-project.org/web/packages/MetaPath


Software prerequisites

KindDescription
Required to useGraphviz

This entry (in part or in whole) was last reviewed on 19 April 2018.



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Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

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