Difference between revisions of "Phylographer"
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|Short description=Visualizes evolutionary relationships | |Short description=Visualizes evolutionary relationships | ||
|Full description=PhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness. | |Full description=PhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness. | ||
| + | |Homepage URL=http://atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html | ||
|User level=none | |User level=none | ||
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|Computer languages=Tcl/tk | |Computer languages=Tcl/tk | ||
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|Related projects=GAUL,Open_BEAGLE,Split-Dist,fastDNAml | |Related projects=GAUL,Open_BEAGLE,Split-Dist,fastDNAml | ||
|Keywords=science,biology,protein,phylographer,genetics,gene,evolution | |Keywords=science,biology,protein,phylographer,genetics,gene,evolution | ||
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|Version identifier=2003-04-03 | |Version identifier=2003-04-03 | ||
|Version date=2003-04-03 | |Version date=2003-04-03 | ||
|Version status=stable | |Version status=stable | ||
|Version download=http://atgc.org/PhyloGrapher/PhyloGrapher_April_03_2003.tar.gz | |Version download=http://atgc.org/PhyloGrapher/PhyloGrapher_April_03_2003.tar.gz | ||
| + | |Version comment=2003-04-03 stable released 2003-04-03 | ||
| + | |Last review by=Alejandroindependiente | ||
| + | |Last review date=2017/03/03 | ||
| + | |Submitted by=Database conversion | ||
| + | |Submitted date=2011-04-01 | ||
| + | |Status= | ||
| + | |Is GNU=No | ||
| + | |License verified date=2002-11-07 | ||
| + | }} | ||
| + | {{Project license | ||
| + | |License=GPLv2orlater | ||
| + | |License verified by=Janet Casey | ||
|License verified date=2002-11-07 | |License verified date=2002-11-07 | ||
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}} | }} | ||
{{Person | {{Person | ||
| + | |Real name=Alexander Kozik | ||
|Role=Maintainer | |Role=Maintainer | ||
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|Email=akozik@atgc.org | |Email=akozik@atgc.org | ||
|Resource URL= | |Resource URL= | ||
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|Science=biology | |Science=biology | ||
|Use=science | |Use=science | ||
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}} | }} | ||
{{Software prerequisite | {{Software prerequisite | ||
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|Prerequisite description=fasta (ftp://ftp.virginia.edu/pub/fasta) | |Prerequisite description=fasta (ftp://ftp.virginia.edu/pub/fasta) | ||
}} | }} | ||
| + | {{Featured}} | ||
Latest revision as of 11:08, 3 March 2017
Phylographer
http://atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html
Visualizes evolutionary relationships
PhyloGrapher helps you visualize and study evolutionary relationships within families of homologous genes or proteins (elements). It is a drawing tool that generates custom graphs for the given set of elements. It can be used to visualize any type of interactions between elements you want. Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Alexander Kozik | Maintainer |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Bug Tracking,Developer,Support | mailto:akozik@atgc.org |
Software prerequisites
| Kind | Description |
|---|---|
| Weak prerequisite | fasta (ftp://ftp.virginia.edu/pub/fasta) |
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.