Prime-phylo
Prime-phylo
http://prime.sbc.su.se
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Download
http://ftp.debian.org/debian/pool/main/p/prime-phylo/prime-phylo_1.0.11.orig.tar.gz
Categories
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
17 October 2014
Notes
License: bsd-3-clause
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
17 October 2014
Notes
License: gpl-3
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
17 October 2014
Notes
License: mtl
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Erik Sjolund | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://prime.sbc.su.se/download/ | |
| Debian (Ref) | https://tracker.debian.org/pkg/prime-phylo |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.