Difference between revisions of "PyNAST"
(Added Debian link) |
m (*resource kind) |
||
| (4 intermediate revisions by 2 users not shown) | |||
| Line 15: | Line 15: | ||
nucleic acid sequences and template alignments can be provided, | nucleic acid sequences and template alignments can be provided, | ||
PyNAST is not limited to the analysis of 16s rDNA sequences. | PyNAST is not limited to the analysis of 16s rDNA sequences. | ||
| − | |Homepage URL= | + | |Homepage URL=https://github.com/biocore/pynast |
| + | |Is High Priority Project=No | ||
| + | |VCS checkout command=git clone https://github.com/biocore/pynast.git | ||
| + | |Decommissioned or Obsolete=No | ||
| + | |Version identifier=1.2.2-4 | ||
| + | |Version download=https://github.com/biocore/pynast/archive/master.zip | ||
| + | |Last review by=Mertgor | ||
| + | |Last review date=2020/04/24 | ||
| + | |Submitted date=2015-07-17 | ||
|Accepts cryptocurrency donations=No | |Accepts cryptocurrency donations=No | ||
| − | | | + | |Test entry=No |
| − | |||
| − | |||
| − | |||
| − | |||
|Is GNU=No | |Is GNU=No | ||
}} | }} | ||
| Line 29: | Line 33: | ||
|License verified by=Debian: Andreas Tille <tille@debian.org> | |License verified by=Debian: Andreas Tille <tille@debian.org> | ||
|License verified date=2014-08-11 | |License verified date=2014-08-11 | ||
| − | |License note=License: | + | |License note=License: Modified BSD License (also known as New or Revised BSD) |
}} | }} | ||
{{Person | {{Person | ||
| Line 41: | Line 45: | ||
}} | }} | ||
{{Resource | {{Resource | ||
| − | |Resource kind= | + | |Resource kind=VCS Repository Webview |
| − | |Resource URL= | + | |Resource URL=https://github.com/biocore/pynast |
}} | }} | ||
{{Software category}} | {{Software category}} | ||
Latest revision as of 13:20, 24 April 2020
Pynast
https://github.com/biocore/pynast
alignment of short DNA sequences
The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.
Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
Download
https://github.com/biocore/pynast/archive/master.zip
version 1.2.2-4
VCS Checkout
git clone https://github.com/biocore/pynast.gitCategories
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
11 August 2014
Notes
License: Modified BSD License (also known as New or Revised BSD)
Leaders and contributors
| Contact(s) | Role |
|---|---|
| PyNAST Development Team | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) (R) | https://tracker.debian.org/pkg/pynast | |
| VCS Repository Webview | https://github.com/biocore/pynast |
Software prerequisites
This entry (in part or in whole) was last reviewed on 24 April 2020.
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.