Difference between revisions of "PyNAST"

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|Homepage URL=https://github.com/biocore/pynast
 
|Homepage URL=https://github.com/biocore/pynast
 
|Is High Priority Project=No
 
|Is High Priority Project=No
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|VCS checkout command=git clone https://github.com/biocore/pynast.git
 
|Decommissioned or Obsolete=No
 
|Decommissioned or Obsolete=No
 
|Version identifier=1.2.2-4
 
|Version identifier=1.2.2-4
|Version download=http://ftp.debian.org/debian/pool/main/p/pynast/pynast_1.2.2-4.debian.tar.xz
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|Version download=https://github.com/biocore/pynast/archive/master.zip
 
|Last review by=Mertgor
 
|Last review by=Mertgor
 
|Last review date=2020/04/24
 
|Last review date=2020/04/24
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|License verified by=Debian: Andreas Tille <tille@debian.org>
 
|License verified by=Debian: Andreas Tille <tille@debian.org>
 
|License verified date=2014-08-11
 
|License verified date=2014-08-11
|License note=License: bsd
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|License note=License: Modified BSD License (also known as New or Revised BSD)
 
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Revision as of 13:08, 24 April 2020

[edit]

Pynast

https://github.com/biocore/pynast
alignment of short DNA sequences

The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.

Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.





Licensing

License

Verified by

Verified on

Notes

License

Other

Verified by

Debian: Andreas Tille <tille@debian.org>

Verified on

11 August 2014

Notes

License: Modified BSD License (also known as New or Revised BSD)




Leaders and contributors

Contact(s)Role
PyNAST Development Team contact


Resources and communication

AudienceResource typeURI
Debian (Ref) (R)https://tracker.debian.org/pkg/pynast
VCS Repository Webviewhttps://github.com/biocore/pynast


Software prerequisites

This entry (in part or in whole) was last reviewed on 24 April 2020.



Entry





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Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/pynast

[[Category:]]



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