GASiC
Gasic
http://sourceforge.net/projects/gasic/
genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
25 September 2014
Notes
License: bsdlike
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Martin S. Lindner | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://sourceforge.net/projects/gasic/files/ | |
| Debian (Ref) (R) | https://tracker.debian.org/pkg/gasic |
Software prerequisites
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