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Mcl-algorithm

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mcl-algorithm

http://micans.org/mcl/
'MCL' (Markov Cluster Algorithm) is a fast and scalable cluster algorithm for graphs based on stochastic flow. The flow process that the algorithm uses is mathematically sound and intrinsically tied to cluster structure in graphs, which is revealed as the imprint left by the process. The threaded implementation has handled graphs of up to one million nodes within hours, and is widely used in the field of protein family analysis. It comes with sibling utilities for handling and analyzing graphs, matrices, and clusterings.

Documentation

User manpage available in HTML, PS format from http://micans.org/mcl/man/distindex.html; User FAQ available in HTML, PS format from http://micans.org/mcl/man/distindex.html


Download

Download version 05-118 (stable)
released on 28 April 2005

Categories




Licensing

LicenseVerified byVerified onNotes
GPLv2orlaterJanet Casey30 June 2005



Leaders and contributors

Contact(s)Role
Stijn van DongenMaintainer


Resources and communication

Audience Resource type URI
Developer E-mail mailto:mcl-devel@lists.micans.org


Software prerequisites

This entry (in part or in whole) was last reviewed on 30 June 2005.



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Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.


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