Profphd
Profphd
http://predictprotein.org/
secondary structure and solvent accessibility predictor
This package provides prof(1), the protein secondary structure, accessibility and transmembrane helix predictor from Burkhard Rost. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance.
How well does prof(1) perform?
- Secondary structure is predicted at an expected average
accuracy > 72% for the three states helix, strand and loop.
- Solvent accessibility is predicted at a correlation coefficient
(correlation between experimentally observed and predicted relative solvent accessibility) of 0.54
- Transmembrane helix prediction has an expected per-residue
accuracy of about 95%. The number of false positives, i.e., transmembrane helices predicted in globular proteins, is about 2%.
Licensing
License
Verified by
Verified on
Notes
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
29 August 2013
Notes
License: gpl-1+ or artistic
License
Verified by
Debian: Andreas Tille <tille@debian.org>
Verified on
29 August 2013
Notes
License: gpl-2+
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Laszlo Kajan | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | ftp://rostlab.org/profphd/ | |
| Debian (Ref) | https://tracker.debian.org/pkg/profphd |
Software prerequisites
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