Exonerate
Exonerate
http://www.ebi.ac.uk/~guy/exonerate/
generic tool for pairwise sequence comparison
Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.
An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.
This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb
Licensing
License
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License
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Debian
Verified on
20 March 2013
Notes
License: GPL-3+
GPL-3+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see
<http://www.gnu.org/licenses/>.License
Verified by
Debian
Verified on
20 March 2013
Notes
License: GPL-3+ GPL-3+ (see above)
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Guy St.C. Slater | contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Download | http://www.ebi.ac.uk/~guy/exonerate/exonerate-2.0.0.tar.gz | |
| Debian (Ref) | https://tracker.debian.org/pkg/exonerate |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
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