PerlPrimer

From Free Software Directory
 
Jump to: navigation, search
[edit]

PerlPrimer

http://perlprimer.sourceforge.net
Designs primers for standard, bisulphite, and real-time PCR, and sequencing

'PerlPrimer' designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR), and sequencing by automating and simplifying the process of primer design. Current features include calculation of possible primer-dimers, retrieval of genomic or CDNA sequences from Ensembl, the ability to BLAST search primers using the NCBI server, ORF, and CpG island detection algorithms, the ability to add cloning sequences to primers, automatically adjusted to be in-frame, and QPCR primer design without manual intron-exon boundary entry.

Documentation

User tutorial available in HTML format from http://perlprimer.sourceforge.net/tutorial.html


Download

Download version 1.1.21 (stable)
released on 21 November 2011

Categories




Licensing

LicenseVerified byVerified onNotes
GPLv2orlaterJanet Casey21 June 2004



Leaders and contributors

Contact(s)Role
Owen Marshall Maintainer


Resources and communication

AudienceResource typeURI
Bug Tracking,Developer,SupportE-mailmailto:owenjm@users.sourceforge.net


Software prerequisites

KindDescription
Required to uselibwww-perl 5.76 or later
Required to usePerl/Tk
Required to usePerl

This entry (in part or in whole) was last reviewed on 13 February 2017.



Entry
























Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.