Pysam

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Pysam

https://github.com/pysam-developers/pysam
interface for the SAM/BAM sequence alignment and mapping format

Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API.





Licensing

License

Verified by

Verified on

Notes

License

Other

Verified by

Debian: Charles Plessy <plessy@debian.org>

Verified on

19 April 2014

Notes

License: mit

License

Other

Verified by

Debian: Charles Plessy <plessy@debian.org>

Verified on

19 April 2014

Notes

License: bsdlike1

BSDlike1 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF

THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

License

Other

Verified by

Debian: Charles Plessy <plessy@debian.org>

Verified on

19 April 2014

Notes

License: bsdlike2

BSDlike2 This software is provided 'as-is', without any express or implied warranty. In no event will the authors be held liable for any damages arising from the use of this software.

Permission is granted to anyone to use this software for any purpose, including commercial applications, and to alter it and redistribute it freely, subject to the following restrictions:

1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. If you use this software in a product, an acknowledgment in the product documentation would be appreciated but is not required. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any

source distribution.

License

Other

Verified by

Debian: Charles Plessy <plessy@debian.org>

Verified on

19 April 2014

Notes

License: publicdomain PublicDomain This file is in public domain.

License

Other

Verified by

Debian: Charles Plessy <plessy@debian.org>

Verified on

19 April 2014

Notes

License: publicdomain

PublicDomain No copyright is claimed. This code is in the public

domain; do with it what you wish.




Leaders and contributors

Contact(s)Role
Andreas Heger contact


Resources and communication

AudienceResource typeURI
Debian (Ref) (R)https://tracker.debian.org/pkg/python-pysam
Python (Ref)https://pypi.org/project/pysam


Software prerequisites

This entry (in part or in whole) was last reviewed on 5 April 2018.



Entry




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Date 2015-07-17
Source Debian
Source link http://packages.debian.org/sid/python-pysam

[[Category:]]



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