Difference between revisions of "CoaSim"
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|Short description=Coalescence process simulator | |Short description=Coalescence process simulator | ||
|Full description='CoaSim' is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro-satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies. | |Full description='CoaSim' is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro-satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies. | ||
| + | |Homepage URL=http://www.birc.dk/Software/CoaSim/ | ||
|User level=none | |User level=none | ||
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|Computer languages=C++ | |Computer languages=C++ | ||
|Documentation note=User reference manual available in HTML format from http://www.birc.dk/Software/CoaSim/refman/index.html | |Documentation note=User reference manual available in HTML format from http://www.birc.dk/Software/CoaSim/refman/index.html | ||
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|Related projects=CoaSim-gui | |Related projects=CoaSim-gui | ||
|Keywords=simukation,coalescent,recombination,gene conversion,SNP,micro-satellite,haplotypes,genotypes | |Keywords=simukation,coalescent,recombination,gene conversion,SNP,micro-satellite,haplotypes,genotypes | ||
| − | | | + | |Version identifier=4.2.2 |
| − | |Last review by= | + | |Version date=2011/07/11 |
| − | |Last review date= | + | |Version status=stable |
| + | |Version download=http://users-birc.au.dk/mailund/CoaSim/download/coasim-core-4.2.2.tar.gz | ||
| + | |Version comment=4.2.2 stable released 2011-07-11 | ||
| + | |Last review by=Alejandroindependiente | ||
| + | |Last review date=2017/01/21 | ||
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
|Submitted date=2011-04-01 | |Submitted date=2011-04-01 | ||
| − | | | + | |Status= |
| − | | | + | |Is GNU=No |
| − | | | + | |License verified date=2005-02-02 |
| − | | | + | }} |
| + | {{Project license | ||
| + | |License=GPLv2 | ||
| + | |License verified by=Janet Casey | ||
|License verified date=2005-02-02 | |License verified date=2005-02-02 | ||
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}} | }} | ||
{{Person | {{Person | ||
| + | |Real name=Thomas Mailund | ||
|Role=Maintainer | |Role=Maintainer | ||
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|Email=thomas@mailund.dk | |Email=thomas@mailund.dk | ||
|Resource URL= | |Resource URL= | ||
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{{Software category | {{Software category | ||
|Interface=command-line | |Interface=command-line | ||
| − | |Science=biology,scientific-visualization | + | |Science=biology, scientific-visualization |
|Use=science | |Use=science | ||
}} | }} | ||
| − | {{ | + | {{Featured}} |
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Latest revision as of 11:56, 21 January 2017
CoaSim
http://www.birc.dk/Software/CoaSim/
Coalescence process simulator
'CoaSim' is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro-satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Thomas Mailund | Maintainer |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Bug Tracking,Developer,Support | mailto:mailund@birc.dk |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.