Difference between revisions of "PerlPrimer"
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|Short description=Designs primers for standard, bisulphite, and real-time PCR, and sequencing | |Short description=Designs primers for standard, bisulphite, and real-time PCR, and sequencing | ||
|Full description='PerlPrimer' designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR), and sequencing by automating and simplifying the process of primer design. Current features include calculation of possible primer-dimers, retrieval of genomic or CDNA sequences from Ensembl, the ability to BLAST search primers using the NCBI server, ORF, and CpG island detection algorithms, the ability to add cloning sequences to primers, automatically adjusted to be in-frame, and QPCR primer design without manual intron-exon boundary entry. | |Full description='PerlPrimer' designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR), and sequencing by automating and simplifying the process of primer design. Current features include calculation of possible primer-dimers, retrieval of genomic or CDNA sequences from Ensembl, the ability to BLAST search primers using the NCBI server, ORF, and CpG island detection algorithms, the ability to add cloning sequences to primers, automatically adjusted to be in-frame, and QPCR primer design without manual intron-exon boundary entry. | ||
| + | |Homepage URL=http://perlprimer.sourceforge.net | ||
|User level=none | |User level=none | ||
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|Computer languages=Perl | |Computer languages=Perl | ||
|Documentation note=User tutorial available in HTML format from http://perlprimer.sourceforge.net/tutorial.html | |Documentation note=User tutorial available in HTML format from http://perlprimer.sourceforge.net/tutorial.html | ||
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|Keywords=real-time,standard,bioinformatics,cloning,primer,PCR,bisulphate,QPCR,sequencing,primer-dimers,genomic,CDNA,Ensembl,BLAST,NCBI,ORF,CpG,island detection,in-frame,intron-extron boundary entry | |Keywords=real-time,standard,bioinformatics,cloning,primer,PCR,bisulphate,QPCR,sequencing,primer-dimers,genomic,CDNA,Ensembl,BLAST,NCBI,ORF,CpG,island detection,in-frame,intron-extron boundary entry | ||
| − | | | + | |Version identifier=1.1.21 |
| − | |Last review by= | + | |Version date=2011/11/21 |
| − | |Last review date= | + | |Version status=stable |
| + | |Version download=http://prdownloads.sourceforge.net/perlprimer/perlprimer-1.1.21.tar.bz2?download | ||
| + | |Version comment=1.1.21 stable released 2011-11-21 | ||
| + | |Last review by=Alejandroindependiente | ||
| + | |Last review date=2017/02/13 | ||
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
|Submitted date=2011-04-01 | |Submitted date=2011-04-01 | ||
| − | | | + | |Status= |
| − | | | + | |Is GNU=No |
| − | | | + | |License verified date=2004-06-21 |
| − | | | + | }} |
| + | {{Project license | ||
| + | |License=GPLv2orlater | ||
| + | |License verified by=Janet Casey | ||
|License verified date=2004-06-21 | |License verified date=2004-06-21 | ||
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}} | }} | ||
{{Person | {{Person | ||
| + | |Real name=Owen Marshall | ||
|Role=Maintainer | |Role=Maintainer | ||
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|Email=owenjm@users.sourceforge.net | |Email=owenjm@users.sourceforge.net | ||
|Resource URL= | |Resource URL= | ||
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|Science=biology | |Science=biology | ||
|Use=science | |Use=science | ||
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}} | }} | ||
{{Software prerequisite | {{Software prerequisite | ||
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|Prerequisite description=Perl | |Prerequisite description=Perl | ||
}} | }} | ||
| + | {{Featured}} | ||
Latest revision as of 12:48, 13 February 2017
PerlPrimer
http://perlprimer.sourceforge.net
Designs primers for standard, bisulphite, and real-time PCR, and sequencing
'PerlPrimer' designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR), and sequencing by automating and simplifying the process of primer design. Current features include calculation of possible primer-dimers, retrieval of genomic or CDNA sequences from Ensembl, the ability to BLAST search primers using the NCBI server, ORF, and CpG island detection algorithms, the ability to add cloning sequences to primers, automatically adjusted to be in-frame, and QPCR primer design without manual intron-exon boundary entry.
Download
http://prdownloads.sourceforge.net/perlprimer/perlprimer-1.1.21.tar.bz2?download
Categories
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Owen Marshall | Maintainer |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Bug Tracking,Developer,Support | mailto:owenjm@users.sourceforge.net |
Software prerequisites
| Kind | Description |
|---|---|
| Required to use | Perl/Tk |
| Required to use | Perl |
| Required to use | libwww-perl 5.76 or later |
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.