Difference between revisions of "Mcl-algorithm"
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|Short description=Cluster algorithm for graphs | |Short description=Cluster algorithm for graphs | ||
|Full description='MCL' (Markov Cluster Algorithm) is a fast and scalable cluster algorithm for graphs based on stochastic flow. The flow process that the algorithm uses is mathematically sound and intrinsically tied to cluster structure in graphs, which is revealed as the imprint left by the process. The threaded implementation has handled graphs of up to one million nodes within hours, and is widely used in the field of protein family analysis. It comes with sibling utilities for handling and analyzing graphs, matrices, and clusterings. | |Full description='MCL' (Markov Cluster Algorithm) is a fast and scalable cluster algorithm for graphs based on stochastic flow. The flow process that the algorithm uses is mathematically sound and intrinsically tied to cluster structure in graphs, which is revealed as the imprint left by the process. The threaded implementation has handled graphs of up to one million nodes within hours, and is widely used in the field of protein family analysis. It comes with sibling utilities for handling and analyzing graphs, matrices, and clusterings. | ||
| + | |Homepage URL=http://micans.org/mcl/ | ||
|User level=none | |User level=none | ||
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|Component programs=mcl,mcxassemble,mcx,mcxsubs,mcxmap,clminfo,clmmeet,clmdist,clmmate,clmformat,clmimac,clmresidue | |Component programs=mcl,mcxassemble,mcx,mcxsubs,mcxmap,clminfo,clmmeet,clmdist,clmmate,clmformat,clmimac,clmresidue | ||
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|Computer languages=C | |Computer languages=C | ||
|Documentation note=User manpage available in HTML, PS format from http://micans.org/mcl/man/distindex.html; User FAQ available in HTML, PS format from http://micans.org/mcl/man/distindex.html | |Documentation note=User manpage available in HTML, PS format from http://micans.org/mcl/man/distindex.html; User FAQ available in HTML, PS format from http://micans.org/mcl/man/distindex.html | ||
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|Keywords=graphs,cluster,algorithm | |Keywords=graphs,cluster,algorithm | ||
| − | | | + | |Version identifier=14-137 |
| − | |Last review by= | + | |Version date=2014/05/17 |
| − | |Last review date= | + | |Version status=stable |
| + | |Version download=http://micans.org/mcl/src/mcl-latest.tar.gz | ||
| + | |Last review by=Alejandroindependiente | ||
| + | |Last review date=2017/03/01 | ||
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
|Submitted date=2011-04-01 | |Submitted date=2011-04-01 | ||
| − | | | + | |Status= |
| − | | | + | |Is GNU=No |
| − | | | + | |License verified date=2005-06-30 |
| − | | | + | }} |
| + | {{Project license | ||
| + | |License=GPLv2orlater | ||
| + | |License verified by=Janet Casey | ||
|License verified date=2005-06-30 | |License verified date=2005-06-30 | ||
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}} | }} | ||
{{Person | {{Person | ||
| + | |Real name=Stijn van Dongen | ||
|Role=Maintainer | |Role=Maintainer | ||
| − | + | |Resource URL= | |
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| − | |Resource URL= | ||
}} | }} | ||
{{Resource | {{Resource | ||
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|Use=science | |Use=science | ||
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Latest revision as of 13:00, 1 March 2017
mcl-algorithm
http://micans.org/mcl/
Cluster algorithm for graphs
'MCL' (Markov Cluster Algorithm) is a fast and scalable cluster algorithm for graphs based on stochastic flow. The flow process that the algorithm uses is mathematically sound and intrinsically tied to cluster structure in graphs, which is revealed as the imprint left by the process. The threaded implementation has handled graphs of up to one million nodes within hours, and is widely used in the field of protein family analysis. It comes with sibling utilities for handling and analyzing graphs, matrices, and clusterings.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Stijn van Dongen | Maintainer |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Developer | mailto:mcl-devel@lists.micans.org |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.