Difference between revisions of "Melting"
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{{Entry | {{Entry | ||
− | |Name= | + | |Name=MELTING |
− | |Short description=Nearest-neighbor compilation of nucleic acid hybridation | + | |Short description=Nearest-neighbor compilation of nucleic acid hybridation. |
|Full description='''Melting''' computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough. | |Full description='''Melting''' computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough. | ||
− | |Homepage URL=https://www. | + | |Homepage URL=https://www.gnu.org/software/melting/ |
− | | | + | |Is High Priority Project=No |
− | |VCS checkout command=svn | + | |VCS checkout command=svn checkout https://svn.code.sf.net/p/melting/code/trunk melting-code |
− | + | |Documentation note=https://www.ebi.ac.uk/biomodels/tools/melting/melting5-doc/melting.html | |
− | |Documentation note= | + | |
+ | https://www.ebi.ac.uk/biomodels/tools/melting/melting5-doc/DeveloppersGuide.html | ||
+ | |||
+ | '''Selection from the [https://shop.fsf.org/ FSF shop]''' | ||
+ | |||
+ | [https://shop.fsf.org/books/free-freedom-20-richard-stallman Free as in Freedom 2.0, by Richard Stallman] | ||
+ | |||
+ | [https://shop.fsf.org/books-docs/introduction-command-line Introduction to the Command Line] | ||
+ | |||
+ | ---- | ||
+ | ---- | ||
+ | '''[https://www.gnu.org/help/help.html Helping the GNU Project and the Free Software Movement]''' | ||
+ | ---- | ||
+ | ---- | ||
+ | |||
+ | If you have corrections to this entry or questions about it, please contact: mailto:maintainers@gnu.org | ||
+ | ---- | ||
+ | |Decommissioned or Obsolete=No | ||
+ | |Donate=https://my.fsf.org/donate/ | ||
+ | |Related projects=gnustandards | ||
|Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors | |Keywords=biology,DNA,RNA,helix-coil,nucleic acid,nearest neighbors | ||
|Version identifier=5.2.0 | |Version identifier=5.2.0 | ||
|Version date=2014/08/08 | |Version date=2014/08/08 | ||
|Version status=stable | |Version status=stable | ||
− | |Version download=https://sourceforge.net/projects/melting/files/meltingJava/melting5/ | + | |Version download=https://sourceforge.net/projects/melting/files/meltingJava/melting5/MELTING5.2.0.tar.gz/download/ |
− | |Last review by= | + | |Last review by=Bendikker |
− | |Last review date= | + | |Last review date=2019/01/06 |
|Submitted by=Database conversion | |Submitted by=Database conversion | ||
− | |Submitted date=2011 | + | |Submitted date=2011/04/01 |
− | | | + | |User level=advanced |
+ | |Paid support=https://www.fsf.org/resources/service/ | ||
+ | |Accepts cryptocurrency donations=Yes | ||
+ | |Test entry=No | ||
|Is GNU=Yes | |Is GNU=Yes | ||
|GNU package identifier=melting | |GNU package identifier=melting | ||
− | | | + | |Decommissioned/Obsolete=No |
}} | }} | ||
{{Project license | {{Project license | ||
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|License verified by=Genium | |License verified by=Genium | ||
|License verified date=2017/01/29 | |License verified date=2017/01/29 | ||
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}} | }} | ||
{{Person | {{Person | ||
− | |Real name= | + | |Real name=Marine Dumousseau |
|Role=Maintainer | |Role=Maintainer | ||
− | |Email= | + | |Email=marine@ebi.ac.uk |
− | |||
}} | }} | ||
− | {{ | + | {{Resource |
− | + | |Resource audience=Debian (Ref) | |
− | + | |Resource URL=https://tracker.debian.org/pkg/melting | |
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− | |Resource URL= | ||
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}} | }} | ||
{{Resource | {{Resource | ||
− | + | |Resource kind=VCS Repository Webview | |
− | |Resource kind= | + | |Resource URL=https://sourceforge.net/p/melting/code/HEAD/tree |
− | |Resource URL= | ||
}} | }} | ||
{{Resource | {{Resource | ||
− | + | |Resource kind=Mailing List | |
− | |Resource kind= | + | |Resource URL=https://lists.gnu.org/mailman/listinfo/gnu-system-discuss/ |
− | |Resource URL=https:// | ||
}} | }} | ||
{{Resource | {{Resource | ||
− | |||
|Resource kind=Download | |Resource kind=Download | ||
|Resource URL=https://sourceforge.net/projects/melting/files/ | |Resource URL=https://sourceforge.net/projects/melting/files/ | ||
}} | }} | ||
{{Resource | {{Resource | ||
− | + | |Resource kind=General | |
− | |Resource kind= | + | |Resource URL=https://sourceforge.net/projects/melting/ |
− | |Resource URL=https:// | ||
}} | }} | ||
{{Software category | {{Software category | ||
|Interface=command-line, web, x-window-system | |Interface=command-line, web, x-window-system | ||
− | |Programming-language=java | + | |Programming-language=C, java |
+ | |Runs-on=Windows, OS X, GNU/Linux | ||
|Science=chemistry | |Science=chemistry | ||
|Use=science | |Use=science | ||
}} | }} | ||
{{Featured}} | {{Featured}} |
Latest revision as of 10:42, 6 January 2019
MELTING
https://www.gnu.org/software/melting/
Nearest-neighbor compilation of nucleic acid hybridation.
Melting computes, for a nucleic acid duplex, the enthalpy and entropy of the helix-coil transition, and then its melting temperatures. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program uses the method of nearest-neighbors. The set of thermodynamic parameters can easily be changed, for instance following an experimental breakthrough.
This is a GNU package:melting
Download
https://sourceforge.net/projects/melting/files/meltingJava/melting5/MELTING5.2.0.tar.gz/download/
Categories
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
Contact(s) | Role |
---|---|
Marine Dumousseau | Maintainer |
Resources and communication
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.