Bcbio-nextgen

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bcbio-nextgen

https://bcbio-nextgen.readthedocs.org/en/latest/
genome variant calling and RNA-seq analysis

A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.


Download

nextgen install.py Download (stable)
released on 20 June 2014

VCS Checkout

Categories

Extension or Plugin

This package can be used as an extension, plugin, or add-on to:




Licensing

LicenseVerified byVerified onNotes
Expat



Leaders and contributors

Contact(s)Role
Brad Chapman primary contact


Resources and communication

AudienceResource typeURI
geomes and RNA-seq tools user groupMailing Listhttps://groups.google.com/forum/#!forum/biovalidation


Software prerequisites



Entry









"primary contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.


"geomes and RNA-seq tools user group" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.










Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.

The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.