Bcbio-nextgen

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bcbio-nextgen

https://bcbio-nextgen.readthedocs.org/en/latest/
genome variant calling and RNA-seq analysis

A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.

Extension or Plugin

This package can be used as an extension, plugin, or add-on to:





Licensing

License

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Notes




Leaders and contributors

Contact(s)Role
Brad Chapman primary contact


Resources and communication

AudienceResource typeURI
geomes and RNA-seq tools user groupMailing Listhttps://groups.google.com/forum/#!forum/biovalidation
Python (Ref)https://pypi.org/project/bcbio-nextgen


Software prerequisites

This entry (in part or in whole) was last reviewed on 30 March 2018.



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"primary contact" is not in the list (Maintainer, Contributor, Developer, Sponsor, Unknown) of allowed values for the "Role" property.


"Python (Ref)" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.


"geomes and RNA-seq tools user group" is not in the list (General, Help, Bug Tracking, Support, Developer) of allowed values for the "Resource audience" property.








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