Bcbio-nextgen
bcbio
https://bcbio-nextgen.readthedocs.org/en/latest/
Genome variant calling and RNA-seq analysis.
A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.
Licensing
License
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Notes
Leaders and contributors
| Contact(s) | Role |
|---|---|
| Brad Chapman | primary contact |
Resources and communication
| Audience | Resource type | URI |
|---|---|---|
| Debian (Ref) (R) | https://tracker.debian.org/pkg/bcbio | |
| VCS Repository Webview | https://github.com/chapmanb/bcbio-nextgen | |
| Python (Ref) | https://pypi.org/project/bcbio-nextgen | |
| geomes and RNA-seq tools user group | Mailing List | https://groups.google.com/forum/#!forum/biovalidation |
Software prerequisites
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