Spot potential problems in high througput sequencing datasets.
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application
released on 8 January 2019
20 March 2013
Leaders and contributors
Resources and communication
|Debian (Ref) (R)||https://tracker.debian.org/pkg/fastqc|
|VCS Repository Webview||https://github.com/s-andrews/FastQC|
This entry (in part or in whole) was last reviewed on 30 March 2020.
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