Difference between revisions of "Bcbio-nextgen"
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{{Entry | {{Entry | ||
− | |Name=bcbio | + | |Name=bcbio |
|Short description=Genome variant calling and RNA-seq analysis. | |Short description=Genome variant calling and RNA-seq analysis. | ||
|Full description=A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files. | |Full description=A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files. | ||
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|Is High Priority Project=No | |Is High Priority Project=No | ||
|VCS checkout command=git clone https://github.com/chapmanb/bcbio-nextgen | |VCS checkout command=git clone https://github.com/chapmanb/bcbio-nextgen | ||
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|Decommissioned or Obsolete=No | |Decommissioned or Obsolete=No | ||
|Version identifier=1.2.1 | |Version identifier=1.2.1 | ||
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|Extension of=Python | |Extension of=Python | ||
|Component programs=bcbio_nextgen.py | |Component programs=bcbio_nextgen.py | ||
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|Accepts cryptocurrency donations=No | |Accepts cryptocurrency donations=No | ||
|Test entry=No | |Test entry=No |
Latest revision as of 14:45, 31 March 2020
bcbio
https://bcbio-nextgen.readthedocs.org/en/latest/
Genome variant calling and RNA-seq analysis.
A python toolkit providing best-practice pipelines for fully automated high throughput RNA sequencing analysis. It can work with BWA, .bam or .fastq files.
Licensing
License
Verified by
Verified on
Notes
Leaders and contributors
Contact(s) | Role |
---|---|
Brad Chapman | primary contact |
Resources and communication
Audience | Resource type | URI |
---|---|---|
Debian (Ref) (R) | https://tracker.debian.org/pkg/bcbio | |
VCS Repository Webview | https://github.com/chapmanb/bcbio-nextgen | |
Python (Ref) | https://pypi.org/project/bcbio-nextgen | |
geomes and RNA-seq tools user group | Mailing List | https://groups.google.com/forum/#!forum/biovalidation |
Software prerequisites
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.