Difference between revisions of "Pathomx"
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|Name=MetaPath | |Name=MetaPath | ||
|Short description=Metabolic pathway visualisation and analysis | |Short description=Metabolic pathway visualisation and analysis | ||
− | |Full description= | + | |Full description=Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. |
− | of experimental data. | ||
− | + | The software functions as a hybrid of workflow and script-based approaches to analysis. Using workflows it is possible to construct rapid, reproducible analysis constructs for experimental data. By combining this with custom inline scripting it is possible to perform any analysis imaginable. Workflows can be dynamically re-arranged to test different approaches and saved to track the development of your approach. Saved workflows can also be shared with other users or groups, allowing instant reproduction of results and methods. Tools can export images as publication-ready high resolution images in common formats. | |
− | + | |Homepage URL=http://pathomx.org | |
− | |||
− | |||
− | |||
− | |Homepage URL= | ||
|User level=beginner | |User level=beginner | ||
+ | |Is High Priority Project=No | ||
|Computer languages=Python | |Computer languages=Python | ||
− | |Version identifier= | + | |Decommissioned/Obsolete=No |
+ | |Accepts cryptocurrency donations=No | ||
+ | |Version identifier=3.02 | ||
|Version date=2013/04/09 | |Version date=2013/04/09 | ||
− | |Version status= | + | |Version status=rolling |
− | |Version download= | + | |Version download=http://docs.pathomx.org/en/latest/install.html |
− | | | + | |Test entry=No |
+ | |Last review by=Bendikker | ||
+ | |Last review date=2018/04/19 | ||
+ | |Submitted by=Bendikker | ||
+ | |Submitted date=2018/3/29 | ||
|Is GNU=No | |Is GNU=No | ||
}} | }} | ||
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|Role=Lead developer | |Role=Lead developer | ||
|Email=martin.fitzpatrick@gmail.com | |Email=martin.fitzpatrick@gmail.com | ||
− | |Resource URL= | + | }} |
+ | {{Resource | ||
+ | |Resource audience=R (Ref) (R) | ||
+ | |Resource URL=https://cran.r-project.org/web/packages/MetaPath | ||
+ | }} | ||
+ | {{Resource | ||
+ | |Resource audience=Python (Ref) | ||
+ | |Resource URL=https://pypi.org/project/Pathomx | ||
}} | }} | ||
{{Resource | {{Resource | ||
|Resource audience=Developer | |Resource audience=Developer | ||
|Resource kind=VCS Repository Webview | |Resource kind=VCS Repository Webview | ||
− | |Resource URL=https://github.com/ | + | |Resource URL=https://github.com/pathomx/pathomx |
}} | }} | ||
{{Software category | {{Software category |
Latest revision as of 07:20, 19 April 2018
MetaPath
http://pathomx.org
Metabolic pathway visualisation and analysis
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis.
The software functions as a hybrid of workflow and script-based approaches to analysis. Using workflows it is possible to construct rapid, reproducible analysis constructs for experimental data. By combining this with custom inline scripting it is possible to perform any analysis imaginable. Workflows can be dynamically re-arranged to test different approaches and saved to track the development of your approach. Saved workflows can also be shared with other users or groups, allowing instant reproduction of results and methods. Tools can export images as publication-ready high resolution images in common formats.
Licensing
License
Verified by
Verified on
Notes
License
Leaders and contributors
Contact(s) | Role |
---|---|
Martin Fitzpatrick | Lead developer |
Resources and communication
Audience | Resource type | URI |
---|---|---|
R (Ref) (R) | https://cran.r-project.org/web/packages/MetaPath | |
Developer | VCS Repository Webview | https://github.com/pathomx/pathomx |
Python (Ref) | https://pypi.org/project/Pathomx |
Software prerequisites
Kind | Description |
---|---|
Required to use | Graphviz |
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the page “GNU Free Documentation License”.
The copyright and license notices on this page only apply to the text on this page. Any software or copyright-licenses or other similar notices described in this text has its own copyright notice and license, which can usually be found in the distribution or license text itself.